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microarray experiments  (Thermo Fisher)


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    Thermo Fisher microarray experiments
    Microarray Experiments, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+experiment/microarray+experiments/pm40314655-69-0-11
    Average 90 stars, based on 1 article reviews
    microarray experiments - by Bioz Stars, 2026-10
    90/100 stars

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    Microarray:

    Article Title: Epidermal differentiation complex (locus 1q21) gene expression in head and neck cancer and normal mucosa
    Article Snippet: .. 500 ng of total RNA from 48 tissue fragments (24 tumor and 24 corresponding surrounding tissues) were used for the microarray experiment (Affymetrix GeneChip Human 1.0 ST Arrays). .. The cDNA was synthesized, fragmented and labeled with biotin using the Ambion WT Expression Kit (Life Technologies) following the procedure described in the Ambion WT Expression Protocol.

    Article Title: A transcriptomic dataset comparing two methods of hepatocyte differentiation from human induced pluripotent stem cells.
    Article Snippet: .. RNA Processing and Microarray Experiment All reagents and instruments used in the microarray experiment were obtained from Affymetrix (Santa Clara, CA). ..

    Article Title: Visually Induced Changes in Cytokine Production in the Chick Choroid
    Article Snippet: .. Preliminary results from an Affymetrix microarray experiment indicated that IL-6 was increased over 10 fold in choroids of chick eyes following 6 hrs of recovery, compared with normal, untreated eyes ( ). ..

    Article Title: NHR-23 dependent collagen and hedgehog-related genes required for molting
    Article Snippet: .. The microarray experiment evaluated 22,625 probe sets on the C. elegans whole genome expression arrays (Affymetrix) with triplicate RNA samples generated from wild type or an age-matched sample of nhr-23 RNAi treated animals. ..

    Article Title: The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis
    Article Snippet: .. An Affymetrix microarray experiment was then conducted using the RNA samples. ..

    Article Title: Cellulose-Derived Oligomers Act as Damage-Associated Molecular Patterns and Trigger Defense-Like Responses
    Article Snippet: However, it also has been shown that the profile of early signaling events, including the kinetics of transcriptional changes following elicitor treatment, varies between elicitors ( Garcia-Brugger et al., 2006 ; Zipfel et al., 2006 ; Denoux et al., 2008 ). .. With this in mind, we performed an Affymetrix microarray experiment on Arabidopsis seedling roots treated with chitooligomers, OG s, or cellobiose for 25-min (early) and 3-h (late) time points. ..

    Article Title: Zebrafish Pou5f1-dependent transcriptional networks in temporal control of early development
    Article Snippet: .. The upregulaton of 191 Cluster DE members was confirmed by the independent Affymetrix microarray experiment (Supplementary Methods and ). ..

    Article Title: Translating standards into practice - one Semantic Web API for Gene Expression.
    Article Snippet: BIND(IRI(fn:concat(‘‘http://bio2rdf.org/ affymetrix:’’, ?probeid)) as ?probeuri) SERVICE { ?probeuri affy:xGeneChip_Array ?platform. } .. } In the rule template above, the several elements that describe a microarray experiment are spread out as properties of different classes (e.g. biordf:microarray_experiment, magetab:title) and even in a different SPARQL endpoint (http://affymetrix.bio2rdf.org/sparql), in the case of the platform: property. ..

    Expressing:

    Article Title: NHR-23 dependent collagen and hedgehog-related genes required for molting
    Article Snippet: .. The microarray experiment evaluated 22,625 probe sets on the C. elegans whole genome expression arrays (Affymetrix) with triplicate RNA samples generated from wild type or an age-matched sample of nhr-23 RNAi treated animals. ..

    Generated:

    Article Title: NHR-23 dependent collagen and hedgehog-related genes required for molting
    Article Snippet: .. The microarray experiment evaluated 22,625 probe sets on the C. elegans whole genome expression arrays (Affymetrix) with triplicate RNA samples generated from wild type or an age-matched sample of nhr-23 RNAi treated animals. ..



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    A) The stacked bar chart represents a summary of total upregulated (red) and downregulated (green) genes representing 22 important signaling and disease pathways in AD subjects compared to controls. The output core analysis, reflecting the differential gene expressions obtained from the microarrays (gene sets with≥2-fold change, t -test, p < 0.05). B) Ingenuity Pathway Analysis (IPA)-derived Amyloid Processing network of differentially expressed genes derived from <t>microarray</t> analysis. IPA analysis identified a group of genes expression status and their potential interactive links in the context of Amyloid Processing, Neuronal Death. We noted activation of Gamma Secretase, Beta Secretase, upregulation of ERK1/2 CK1/2 P38MAPK, PKA, PRKCE, CDK5 , and CDK5R1 and downregulation of MAPT , and GSK3B .
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    A) The stacked bar chart represents a summary of total upregulated (red) and downregulated (green) genes representing 22 important signaling and disease pathways in AD subjects compared to controls. The output core analysis, reflecting the differential gene expressions obtained from the microarrays (gene sets with≥2-fold change, t -test, p < 0.05). B) Ingenuity Pathway Analysis (IPA)-derived Amyloid Processing network of differentially expressed genes derived from <t>microarray</t> analysis. IPA analysis identified a group of genes expression status and their potential interactive links in the context of Amyloid Processing, Neuronal Death. We noted activation of Gamma Secretase, Beta Secretase, upregulation of ERK1/2 CK1/2 P38MAPK, PKA, PRKCE, CDK5 , and CDK5R1 and downregulation of MAPT , and GSK3B .
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    Image Search Results


    A) The stacked bar chart represents a summary of total upregulated (red) and downregulated (green) genes representing 22 important signaling and disease pathways in AD subjects compared to controls. The output core analysis, reflecting the differential gene expressions obtained from the microarrays (gene sets with≥2-fold change, t -test, p < 0.05). B) Ingenuity Pathway Analysis (IPA)-derived Amyloid Processing network of differentially expressed genes derived from microarray analysis. IPA analysis identified a group of genes expression status and their potential interactive links in the context of Amyloid Processing, Neuronal Death. We noted activation of Gamma Secretase, Beta Secretase, upregulation of ERK1/2 CK1/2 P38MAPK, PKA, PRKCE, CDK5 , and CDK5R1 and downregulation of MAPT , and GSK3B .

    Journal: Journal of Alzheimer's Disease Reports

    Article Title: Transcriptomic Analysis of Alzheimer’s Disease Pathways in a Pakistani Population 1

    doi: 10.3233/ADR-230146

    Figure Lengend Snippet: A) The stacked bar chart represents a summary of total upregulated (red) and downregulated (green) genes representing 22 important signaling and disease pathways in AD subjects compared to controls. The output core analysis, reflecting the differential gene expressions obtained from the microarrays (gene sets with≥2-fold change, t -test, p < 0.05). B) Ingenuity Pathway Analysis (IPA)-derived Amyloid Processing network of differentially expressed genes derived from microarray analysis. IPA analysis identified a group of genes expression status and their potential interactive links in the context of Amyloid Processing, Neuronal Death. We noted activation of Gamma Secretase, Beta Secretase, upregulation of ERK1/2 CK1/2 P38MAPK, PKA, PRKCE, CDK5 , and CDK5R1 and downregulation of MAPT , and GSK3B .

    Article Snippet: The oligonucleotide microarray experiments were conducted by EpigenDx (Boston, MA) using the Affymetrix U133 Plus 2.0 Array platform, which has comprehensive coverage of the whole transcribed human genome on a single array.

    Techniques: Derivative Assay, Microarray, Expressing, Activation Assay